Export Options

After putting information into RSpace, it’s important to be able to get it out again. There are a two main export options in RSpace: you can export either some or all of your own work, or, if you’re in a LabGroup, your PI can export your entire group’s work (see Exporting a LabGroup’s Work).

Choose XML archive as an export format if you wish to be able to reimport the data into RSpace.

Exporting a selection of your work from the Workspace

  1. In the Workspace, browse or search to show a desired selection of files (including a single file), then click in the checkboxes at the left of the files you wish to select for export.

  1. Clicking on the first checkbox reveals the sub-menu of file management options, which will be applied to your whole selection. Choose the Export option in the sub-menu to bring up the Export dialog.

  1. Select an export format, then click on Next. There are different options to configure dependent on the type of export file format you choose – see Export Formats for further information about export file types and how to choose between them. You may also see options to export your data directly to a supported third party repository such as Dataverse and to include files that appear in your document as links, but which are located outside of RSpace in supported external file stores.
  1. The next screen allows you to specify details of your exports; it will depend on the format chosen (Export Formats). As an example, a .ZIP HTML bundle has been chosen. Click Export to confirm.

  1. You will get a notification that your export request has been received. When the export is ready, you will be notified. Click on the notification icon to access it.

  1. If you've chosen HTML or XML as a format, the export notification will contain a link that will trigger a download of the exported files when clicked. If you've chosen PDF or DOC as a format, the notification will contain a link to the Exports section of the Gallery tab. You can download the export by selecting its checkbox, and clicking on 'Download' in the side-panel (as displayed below).

HTML/XML:

PDF/DOC:

From 1.47, you can export items and folders from the Gallery as well as the Workspace. The process is similar to that of exporting a selection of your work from the Workspace; the only difference is that you have to select the documents through the Gallery tab.

Exporting all of your work

  1. If you want to export all of the work you have produced, go to My RSpace:
  1. Then click on the right arrow until you can see the Export-Import button and click it:
  1. In the resulting page, click on Export all my work and choose the format (more information in Export Formats). If you choose HTML or XML, all of your documents, notebooks and attachments will be included in the export. Exporting also preserves external links with their source paths, and, for PDF exports, a footer table is generated with details of the full path for each included link.

See Migrating Data from Community or Test Server to Enterprise if your goal is to transfer your data to a different RSpace instance.

Bundling linked external files in your exports

You can optionally include externally stored files that have been included in RSpace documents as links. This is a powerful Research Data Management tool that can be used to reunite descriptive records (i.e your RSpace documents) with associated large files or datasets kept in any number of data stores you control. You can then download the whole bundle (RSpace documents plus external files) to your local machine, or send the bundle to an external repository, adding tags as needed to help categorize your data. To include external files with your exports, first choose a suitable format in the export dialog then toggle the "Include filestore links" switch:

The system may ask you to log in to any filestores you are not already logged into to verify that you have permission to access those files:

You should then see a list of all detected external files that will be included with your bundle. Click OK to continue.

Associating exports with a previously imported Data Management Plans (DMP)

Learn more about working with Data Management Plans from DMPTool here.

Learn more about working with Data Management Plans from Argos here.

Adding tags to export bundles that can become structured metadata in repository destinations

If you choose to send an export to a repository you can use the RSpace tagging mechanism to add controlled vocabulary tags to your export bundle. RSpace will automatically detect and add existing tags that appear in the documents you are exporting, and you can choose to keep or remove those, or add additional tags which can then appear as associated metadata in the selected repository. In the example below a user has added the tags "caffeine" and "aribica coffee bean" in the RSpace export-to-repository dialog:

RSpace then passes these tags to the keyword field of the repository (Dataverse in this case) and even includes the URI for the source of that term if it is known to RSpace:

The embedded keywords make your exported work more discoverable so that other scientists can locate, categorize and and trace data based on unified metadata used consistently in both RSpace and the selected repository, even accross and between different institutions. When adding tags to the work you are exporting, you can only select terms from established vocabularies with associated URIs, not your own custom tags. This helps to enforce the use of recognized "within industry" tagging conventions for data categorization rather than ad-hoc schemas used only by you or your lab.

It's also possible to export data programatically using the RSpace API. See our swagger documentation for details


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